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https://github.com/MillironX/nf-core_modules.git
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879d42c5e2
* refactor: insert .fastq file extensions * style: insert whitespace * refactor: create paired output * refactor: rename settings from log Requested by @jfy133 * tests: correct expected output * fix: remove settings option due to default * chore: rename output patterns * refactor: omit paired files in single-end * refactor: rename output to settings
45 lines
2.1 KiB
YAML
45 lines
2.1 KiB
YAML
- name: adapterremoval test_adapterremoval_single_end
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command: nextflow run tests/modules/adapterremoval -entry test_adapterremoval_single_end -c tests/config/nextflow.config
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tags:
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- adapterremoval
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files:
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- path: output/adapterremoval/test.discarded.fastq.gz
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- path: output/adapterremoval/test.settings
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md5sum: 2fd3d5d703b63ba33a83021fccf25f77
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- path: output/adapterremoval/test.truncated.fastq.gz
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md5sum: 62139afee94defad5b83bdd0b8475a1f
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- path: output/adapterremoval/versions.yml
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md5sum: ac5b46719719b7ee62739530b80869fc
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- name: adapterremoval test_adapterremoval_paired_end
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command: nextflow run tests/modules/adapterremoval -entry test_adapterremoval_paired_end -c tests/config/nextflow.config
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tags:
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- adapterremoval
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files:
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- path: output/adapterremoval/test.discarded.fastq.gz
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- path: output/adapterremoval/test.settings
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md5sum: b8a451d3981b327f3fdb44f40ba2d6d1
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- path: output/adapterremoval/test.pair1.truncated.fastq.gz
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md5sum: 294a6277f0139bd597e57c6fa31f39c7
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- path: output/adapterremoval/test.pair2.truncated.fastq.gz
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md5sum: de7b38e2c881bced8671acb1ab452d78
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- path: output/adapterremoval/versions.yml
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md5sum: fa621c887897da5a379c719399c17db7
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- name: adapterremoval test_adapterremoval_paired_end_collapse
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command: nextflow run tests/modules/adapterremoval -entry test_adapterremoval_paired_end_collapse -c tests/config/nextflow.config
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tags:
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- adapterremoval
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files:
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- path: output/adapterremoval/test.collapsed.fastq.gz
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md5sum: ff956de3532599a56c3efe5369f0953f
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- path: output/adapterremoval/test.collapsed.truncated.fastq.gz
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- path: output/adapterremoval/test.discarded.fastq.gz
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- path: output/adapterremoval/test.settings
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md5sum: 7f0b2328152226e46101a535cce718b3
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- path: output/adapterremoval/test.pair1.truncated.fastq.gz
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md5sum: 683be19bc1c83008944b6b719bfa34e1
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- path: output/adapterremoval/test.pair2.truncated.fastq.gz
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md5sum: e6548fe061f3ef86368b26da930174d0
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- path: output/adapterremoval/versions.yml
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md5sum: 78f589bb313c8da0147ca8ce77d7f3bf
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