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https://github.com/MillironX/nf-core_modules.git
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a6e0629e24
* Change intervals to be part of sample specific input * Fix some tests * Update checksum * Update intervals * Update intervals * Try out gavins idea for adding the file * update test line * update test line * update test line * revert contains line
32 lines
1.3 KiB
YAML
32 lines
1.3 KiB
YAML
- name: gatk4 applybqsr test_gatk4_applybqsr
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command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsr
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files:
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- path: output/gatk4/test.bam
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md5sum: 8fe7c4b5fcfb72d24ed8102eb26e42fb
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- path: output/gatk4/versions.yml
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md5sum: 8a2fb7c7e38f24d3fefd5e84da701b00
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- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
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command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsr
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files:
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- path: output/gatk4/test.bam
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md5sum: a7a1d1373ac1529abbc5e05359718ab1
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- path: output/gatk4/versions.yml
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md5sum: 550eecbb88887fadf8c62c5992ae48af
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- name: gatk4 applybqsr test_gatk4_applybqsr_cram
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command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_cram -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsr
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files:
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- path: output/gatk4/test.cram
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md5sum: b7659b3b2adaabbe73658dc059dbfdf6
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- path: output/gatk4/versions.yml
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md5sum: 57933f27b3a31b05af3f7c248d365396
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