mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 00:02:04 +00:00
50eafb19c6
* Update version for log4j vulnerability * update checksums * update checksums * update checksums * Remove todo string * remove werid output paths * remove werid output paths * remove werid output paths * Update various checksums * Update various checksums * Remove unstable md5sums * Update md5sums * Fix pileupsummary * Fix genotypegvcfs * Update test files mutect2 * hm genotypevcf updated again * Update some mutect checksums and whatnot * Fix last mutect checksum * Apply suggestion to use mtochondria data instead
34 lines
1.7 KiB
YAML
34 lines
1.7 KiB
YAML
- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_tumor_only
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command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_tumor_only -c tests/config/nextflow.config -c ./tests/modules/gatk4/calculatecontamination/nextflow.config
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tags:
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- gatk4
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- gatk4/calculatecontamination
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files:
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- path: output/gatk4/test.contamination.table
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md5sum: 46c708c943b453da89a3da08acfdb2a7
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- path: output/gatk4/versions.yml
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md5sum: 6f2396e71389cdfd184f91222c24fe8d
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- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_matched_pair
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command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_matched_pair -c tests/config/nextflow.config -c ./tests/modules/gatk4/calculatecontamination/nextflow.config
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tags:
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- gatk4
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- gatk4/calculatecontamination
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files:
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- path: output/gatk4/test.contamination.table
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md5sum: 46c708c943b453da89a3da08acfdb2a7
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- path: output/gatk4/versions.yml
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md5sum: 26863fa1e7e7d50d1a10761eced26062
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- name: gatk4 calculatecontamination test_gatk4_calculatecontamination_segmentation
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command: nextflow run tests/modules/gatk4/calculatecontamination -entry test_gatk4_calculatecontamination_segmentation -c tests/config/nextflow.config -c ./tests/modules/gatk4/calculatecontamination/nextflow.config
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tags:
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- gatk4
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- gatk4/calculatecontamination
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files:
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- path: output/gatk4/test.contamination.table
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md5sum: 46c708c943b453da89a3da08acfdb2a7
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- path: output/gatk4/test.segmentation.table
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md5sum: f4643d9319bde4efbfbe516d6fb13052
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- path: output/gatk4/versions.yml
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md5sum: 8b1191953ff20660e06e2a5d79e96b02
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