mirror of
https://github.com/MillironX/nf-core_modules.git
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50eafb19c6
* Update version for log4j vulnerability * update checksums * update checksums * update checksums * Remove todo string * remove werid output paths * remove werid output paths * remove werid output paths * Update various checksums * Update various checksums * Remove unstable md5sums * Update md5sums * Fix pileupsummary * Fix genotypegvcfs * Update test files mutect2 * hm genotypevcf updated again * Update some mutect checksums and whatnot * Fix last mutect checksum * Apply suggestion to use mtochondria data instead
19 lines
819 B
YAML
19 lines
819 B
YAML
- name: gatk4 fastqtosam test_gatk4_fastqtosam_single_end
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command: nextflow run tests/modules/gatk4/fastqtosam -entry test_gatk4_fastqtosam_single_end -c tests/config/nextflow.config -c ./tests/modules/gatk4/fastqtosam/nextflow.config
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tags:
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- gatk4
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- gatk4/fastqtosam
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files:
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- path: output/gatk4/test.bam
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- path: output/gatk4/versions.yml
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md5sum: db3fa4b463427b08e32a5d8264be59c1
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- name: gatk4 fastqtosam test_gatk4_fastqtosam_paired_end
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command: nextflow run tests/modules/gatk4/fastqtosam -entry test_gatk4_fastqtosam_paired_end -c tests/config/nextflow.config -c ./tests/modules/gatk4/fastqtosam/nextflow.config
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tags:
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- gatk4
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- gatk4/fastqtosam
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files:
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- path: output/gatk4/test.bam
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- path: output/gatk4/versions.yml
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md5sum: f4e35e46a29d8faebda5e852f9d0a132
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