millironx/nf-core_modules
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nf-core_modules/tests/software/gatk4
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Kevin Menden 043a7d1e3c
remove deprecated test tags (#440) 
* remove deprecated test tags

* fix bowtie, gatk4/applybsqr

* fix gatk4 baserecalibrator

* fixed shovill

* fixed yara/mapper

* fixed kallistobustools/ref paths
2021-04-13 18:03:09 +01:00
..
applybqsr remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
baserecalibrator remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
bedtointervallist Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
createsequencedictionary Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
fastqtosam remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
haplotypecaller Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
markduplicates Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
mergebamalignment Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
mergevcfs remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
revertsam Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
samtofastq remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
splitncigarreads Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
variantfiltration Lint modules ci (#389) 2021-04-08 09:10:52 +01:00