nf-core_modules/modules/abricate/summary/meta.yml
Robert A. Petit III be798861c6
add module for abricate (#1280)
* add module for abricate

* rename abricate/abricate to abricate/run

* Update test.yml

Co-authored-by: Sateesh <33637490+sateeshperi@users.noreply.github.com>
2022-02-18 18:00:21 -07:00

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1.2 KiB
YAML

name: abricate_summary
description: Screen assemblies for antimicrobial resistance against multiple databases
keywords:
- bacteria
- assembly
- antimicrobial reistance
tools:
- abricate:
description: Mass screening of contigs for antibiotic resistance genes
homepage: https://github.com/tseemann/abricate
documentation: https://github.com/tseemann/abricate
tool_dev_url: https://github.com/tseemann/abricate
doi: ""
licence: ['GPL v2', 'GPL v2']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- assembly:
type: file
description: FASTA, GenBank or EMBL formatted file
pattern: "*.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz,gbk,gbk.gz,embl,embl.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- summary:
type: file
description: Tab-delimited report of aggregated results
pattern: "*.{txt}"
authors:
- "@rpetit3"