nf-core_modules/modules/gatk4/revertsam/meta.yml
Harshil Patel e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567)
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
2021-07-07 10:10:18 +01:00

35 lines
1.1 KiB
YAML

name: gatk4_revertsam
description: Reverts SAM or BAM files to a previous state.
keywords:
- sam
- revert
tools:
- gatk4:
description: |
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
with a primary focus on variant discovery and genotyping. Its powerful processing engine
and high-performance computing features make it capable of taking on projects of any size.
homepage: https://gatk.broadinstitute.org/hc/en-us
documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
doi: 10.1158/1538-7445.AM2017-3590
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test']
- bam:
type: file
description: The input bam/sam file
pattern: "*.{bam,sam}"
output:
- bam:
type: file
description: The reverted bam/sam file
pattern: "*.reverted.bam"
- version:
type: file
description: File containing software version
pattern: "*.version.txt"
authors:
- "@kevinmenden"