mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
9bda3dc7f0
* create pear module * add command and tests * remove md5sum from known empty file * add force -f to gzip and gunzip to avoid problems with symbolic links * apply suggestions from review
18 lines
423 B
Text
18 lines
423 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { PEAR } from '../../../modules/pear/main.nf'
|
|
|
|
workflow test_pear {
|
|
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
[
|
|
file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)
|
|
]
|
|
]
|
|
|
|
PEAR ( input )
|
|
}
|