mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
33 lines
1,012 B
Text
33 lines
1,012 B
Text
process BANDAGE_IMAGE {
|
|
tag "${meta.id}"
|
|
label 'process_low'
|
|
|
|
conda (params.enable_conda ? 'bioconda::bandage=0.8.1' : null)
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
|
'https://depot.galaxyproject.org/singularity/bandage:0.8.1--hc9558a2_2' :
|
|
'quay.io/biocontainers/bandage:0.8.1--hc9558a2_2' }"
|
|
|
|
input:
|
|
tuple val(meta), path(gfa)
|
|
|
|
output:
|
|
tuple val(meta), path('*.png'), emit: png
|
|
tuple val(meta), path('*.svg'), emit: svg
|
|
path "versions.yml" , emit: versions
|
|
|
|
when:
|
|
task.ext.when == null || task.ext.when
|
|
|
|
script:
|
|
def args = task.ext.args ?: ''
|
|
def prefix = task.ext.prefix ?: "${meta.id}"
|
|
"""
|
|
Bandage image $gfa ${prefix}.png $args
|
|
Bandage image $gfa ${prefix}.svg $args
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
bandage: \$(echo \$(Bandage --version 2>&1) | sed 's/^.*Version: //; s/ .*\$//')
|
|
END_VERSIONS
|
|
"""
|
|
}
|