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28 lines
977 B
Docker
28 lines
977 B
Docker
# Dockerfile to create container with Cell Ranger v7.0.0
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# Push to nfcore/cellranger:<VER>
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FROM continuumio/miniconda3:4.8.2
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LABEL authors="Gisela Gabernet <gisela.gabernet@gmail.com>" \
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description="Docker image containing Cell Ranger"
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# Disclaimer: this container is not provided nor supported by Illumina or 10x Genomics.
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# Install procps and clean apt cache
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RUN apt-get update --allow-releaseinfo-change \
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&& apt-get install -y \
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cpio \
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procps \
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rpm2cpio \
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unzip \
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&& apt-get clean -y && rm -rf /var/lib/apt/lists/*
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# Copy pre-downloaded cellranger file
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ENV CELLRANGER_VER=6.1.2
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COPY cellranger-$CELLRANGER_VER.tar.gz /opt/cellranger-$CELLRANGER_VER.tar.gz
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# Install cellranger
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RUN \
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cd /opt && \
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tar -xzvf cellranger-$CELLRANGER_VER.tar.gz && \
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export PATH=/opt/cellranger-$CELLRANGER_VER:$PATH && \
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ln -s /opt/cellranger-$CELLRANGER_VER/cellranger /usr/bin/cellranger && \
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rm -rf /opt/cellranger-$CELLRANGER_VER.tar.gz
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