mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
42 lines
1.2 KiB
YAML
42 lines
1.2 KiB
YAML
name: dragmap_align
|
|
description: Performs fastq alignment to a reference using DRAGMAP
|
|
keywords:
|
|
- alignment
|
|
- map
|
|
- fastq
|
|
- bam
|
|
- sam
|
|
tools:
|
|
- dragmap:
|
|
description: Dragmap is the Dragen mapper/aligner Open Source Software.
|
|
homepage: https://github.com/Illumina/dragmap
|
|
documentation: https://github.com/Illumina/dragmap
|
|
tool_dev_url: https://github.com/Illumina/dragmap#basic-command-line-usage
|
|
doi: ""
|
|
licence: ["GPL v3"]
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: |
|
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
|
|
respectively.
|
|
- hashmap:
|
|
type: file
|
|
description: DRAGMAP hash table
|
|
pattern: "Directory containing DRAGMAP hash table *.{cmp,.bin,.txt}"
|
|
output:
|
|
- bam:
|
|
type: file
|
|
description: Output BAM file containing read alignments
|
|
pattern: "*.{bam}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@Emiller88"
|