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55 lines
1.3 KiB
YAML
55 lines
1.3 KiB
YAML
name: svdb_query
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description: Query a structural variant database, using a vcf file as query
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keywords:
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- structural variants
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tools:
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- svdb:
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description: structural variant database software
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homepage: https://github.com/J35P312/SVDB
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documentation: https://github.com/J35P312/SVDB/blob/master/README.md
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licence: ["MIT"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- in_occs:
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type: list
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description: A list of allele count tags
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- in_frqs:
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type: list
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description: A list of allele frequency tags
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- vcf:
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type: file
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description: query vcf file
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pattern: "*.{vcf,vcf.gz}"
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- vcf_db:
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type: file
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description: database vcf file
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pattern: "*.{vcf,vcf.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- out_occs:
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type: list
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description: A list of allele count tags
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- out_frqs:
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type: list
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description: A list of allele frequency tags
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- vcf:
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type: file
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description: Annotated output VCF file
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pattern: "*_query.vcf"
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authors:
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- "@ramprasadn"
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