mirror of
https://github.com/MillironX/nf-core_modules.git
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90aef30f43
* Set process label to `process_single` for modules with no `task.cpus` usage * Fix tests of 'borked' modules * prettier * More modules are single-threaded and can use process_single * Adding process_single to hmmer/esl* modules * Fix failing tests * Prettier Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk> Co-authored-by: Daniel Lundin <erik.rikard.daniel@gmail.com>
26 lines
1.2 KiB
YAML
26 lines
1.2 KiB
YAML
- name: entrezdirect esummary test_entrezdirect_esummary_sra
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command: nextflow run ./tests/modules/entrezdirect/esummary -entry test_entrezdirect_esummary_sra -c ./tests/config/nextflow.config -c ./tests/modules/entrezdirect/esummary/nextflow.config
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tags:
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- entrezdirect
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- entrezdirect/esummary
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files:
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- path: output/entrezdirect/test_sra.xml
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contains: ["WGS of ornithorhynchus anatinus"]
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- name: entrezdirect esummary test_entrezdirect_esummary_genome
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command: nextflow run ./tests/modules/entrezdirect/esummary -entry test_entrezdirect_esummary_genome -c ./tests/config/nextflow.config -c ./tests/modules/entrezdirect/esummary/nextflow.config
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tags:
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- entrezdirect
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- entrezdirect/esummary
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files:
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- path: output/entrezdirect/test_genome.xml
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contains: ["Hypsibius dujardini"]
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- name: entrezdirect esummary test_entrezdirect_esummary_assembly
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command: nextflow run ./tests/modules/entrezdirect/esummary -entry test_entrezdirect_esummary_assembly -c ./tests/config/nextflow.config -c ./tests/modules/entrezdirect/esummary/nextflow.config
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tags:
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- entrezdirect
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- entrezdirect/esummary
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files:
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- path: output/entrezdirect/test_assembly.xml
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contains: ["ContigN50"]
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