mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-26 12:28:17 +00:00
d3369789da
* 👌 IMPROVE: Add some pacbio test files * 🐛 FIX: Add Pacbio index to test_data.config * 👌 IMPROVE: Re add 10000 data test * 👌 IMPROVE: Add some pbindex * 🐛 FIX: Add pbi extension to files * 📦 NEW: Add galgal6 chr30 test data * 📦 NEW: Add bamtools module * 👌 IMPROVE: ignore test data * 👌 IMPROVE : add test bed files * 📦 NEW: Add gstama/merge module * 🐛 FIX: Change process label * 👌 IMPROVE: do not merge empty bed * 🐛 FIX: Change 0 lines files detection * 🐛 FIX: replace spaces by tab * 🐛 FIX: Remove tuple for report channel and add version output channel * 👌 IMPROVE: Update to last templates version * 👌 IMPROVE: Update module to last template version * 👌 IMPROVE: Final version of test datasets config * 👌 IMPROVE: Update test * 👌 IMPROVE: Remove useless index + Fix Typos * 👌 IMPROVE: Fix Typos * 👌 IMPROVE: Updates + clean code - Update to last versions.yml file - Better output channels - Update meta.yml * 👌 IMPROVE: Correct typo * 👌 IMPROVE: Remove included filelist creation and add an input channel * 🐛 FIX: Correct typo * 👌 IMPROVE: Add filelist file * 🐛 FIX: tama_merge.py emit a version number * Update modules/gstama/merge/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * 👌 IMPROVE: Update meta.yml * Update main.nf * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
19 lines
615 B
Text
19 lines
615 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { GSTAMA_MERGE } from '../../../../modules/gstama/merge/main' addParams( options: [suffix:'_merged'] )
|
|
|
|
workflow test_gstama_merge {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
[
|
|
file(params.test_data['homo_sapiens']['pacbio']['genemodel1'], checkIfExists: true),
|
|
file(params.test_data['homo_sapiens']['pacbio']['genemodel2'], checkIfExists: true)
|
|
]
|
|
]
|
|
filelist = file(params.test_data['homo_sapiens']['pacbio']['filelist'], checkIfExists: true)
|
|
|
|
GSTAMA_MERGE ( input, filelist )
|
|
}
|