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38ffbfdb63
* bcf annotate ready2go * edited output name * fixed output * updated bcftools ver * changed contain output string * removed contain key entirely * fixed md5sum for test.yml * using match instead of find * bcftools/annotate refactored with complete test * rm trailing white space Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
23 lines
632 B
Text
23 lines
632 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCFTOOLS_ANNOTATE } from '../../../../modules/bcftools/annotate/main.nf'
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workflow test_bcftools_annotate_out_vcf {
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input = [
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[ id:'test_compressed_vcf', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true) ]
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BCFTOOLS_ANNOTATE ( input )
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}
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workflow test_bcftools_annotate_out_bcf {
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input = [
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[ id:'test_compressed_bcf', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_bcf'], checkIfExists: true) ]
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BCFTOOLS_ANNOTATE ( input )
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}
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