nf-core_modules/modules/samtools/mpileup/meta.yml

name: samtools_mpileup
description:  BAM
keywords:
    - mpileup
    - bam
    - sam
    - cram
tools:
    - samtools:
        description: |
            SAMtools is a set of utilities for interacting with and post-processing
            short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
            These files are generated as output by short read aligners like BWA.            
        homepage: http://www.htslib.org/
        documentation: hhttp://www.htslib.org/doc/samtools.html
        doi: 10.1093/bioinformatics/btp352
input:
    - meta:
        type: map
        description: |
            Groovy Map containing sample information
            e.g. [ id:'test', single_end:false ]            
    - bam:
        type: file
        description: BAM/CRAM/SAM file
        pattern: "*.{bam,cram,sam}"
    - fasta:
        type: file
        description: FASTA reference file
        pattern: "*.{fasta,fa}"
output:
    - meta:
        type: map
        description: |
            Groovy Map containing sample information
            e.g. [ id:'test', single_end:false ]            
    - mpileup:
        type: file
        description: mpileup file
        pattern: "*.{mpileup}"
    - versions:
        type: file
        description: File containing software versions
        pattern: "versions.yml"
authors:
    - "@drpatelh"
    - "@joseespinosa"