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https://github.com/MillironX/nf-core_modules.git
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f1c5384c31
* fix: remove left-over unnecessary code * Add prinseq++ * Remove last todo * Fix tests due to variability of output FASTQs (reads can be ordered differently between runs) * Apply suggestions from code review
24 lines
733 B
Text
24 lines
733 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PRINSEQPLUSPLUS } from '../../../modules/prinseqplusplus/main.nf'
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workflow test_prinseqplusplus_single_end {
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input = [ [ id:'test', single_end:true ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
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]
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PRINSEQPLUSPLUS ( input )
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}
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workflow test_prinseqplusplus_paired_end {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
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]
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PRINSEQPLUSPLUS ( input )
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}
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