mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 11:38:17 +00:00
52 lines
1.5 KiB
YAML
52 lines
1.5 KiB
YAML
name: busco
|
|
description: Benchmarking Universal Single Copy Orthologs
|
|
keywords:
|
|
- quality control
|
|
- genome
|
|
- transcriptome
|
|
- proteome
|
|
tools:
|
|
- busco:
|
|
description: BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB.
|
|
homepage: https://busco.ezlab.org/
|
|
documentation: https://busco.ezlab.org/busco_userguide.html
|
|
tool_dev_url: https://gitlab.com/ezlab/busco
|
|
doi: "10.1007/978-1-4939-9173-0_14"
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Nucleic or amino acid sequence file in FASTA format
|
|
pattern: "*.{fasta}"
|
|
- augustus_config:
|
|
type: directory
|
|
description: AUGUSTUS config directory
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- tsv:
|
|
type: file
|
|
description: Full summary table
|
|
pattern: "*.{tsv}"
|
|
- txt:
|
|
type: file
|
|
description: Short summary text
|
|
pattern: "*.{txt}"
|
|
|
|
authors:
|
|
- "@priyanka-surana"
|
|
- "@charles-plessy"
|