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bc8899f1bf
* make hicap outputs optional * update test data * typo * Update main.nf * use mkfifo * Update main.nf Co-authored-by: Gisela Gabernet <gisela.gabernet@gmail.com> Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
16 lines
472 B
Text
16 lines
472 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { HICAP } from '../../../modules/hicap/main.nf' addParams( options: [:] )
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workflow test_hicap {
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input = [ [ id:'test', single_end:false ], // meta map
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file("https://github.com/bactopia/bactopia-tests/raw/main/data/species/haemophilus_influenzae/genome/GCF_900478275.fna.gz", checkIfExists: true) ]
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database_dir = []
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model_fp = []
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HICAP ( input, database_dir, model_fp )
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}
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