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171a2a2dbf
* Unicycler with long read input * tests and md5sums * remove unstable md5sums * Update modules/unicycler/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
34 lines
1.3 KiB
Text
34 lines
1.3 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { UNICYCLER } from '../../../modules/unicycler/main.nf' addParams( options: [:] )
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workflow test_unicycler_single_end {
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input = [ [ id:'test', single_end:true ], // meta map
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[ file(params.test_data['bacteroides_fragilis']['illumina']['test1_1_fastq_gz'], checkIfExists: true) ],
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[]
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]
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UNICYCLER ( input )
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}
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workflow test_unicycler_paired_end {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['bacteroides_fragilis']['illumina']['test1_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['bacteroides_fragilis']['illumina']['test1_2_fastq_gz'], checkIfExists: true) ],
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[]
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]
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UNICYCLER ( input )
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}
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workflow test_unicycler_shortreads_longreads {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['bacteroides_fragilis']['illumina']['test1_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['bacteroides_fragilis']['illumina']['test1_2_fastq_gz'], checkIfExists: true) ],
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[ file(params.test_data['bacteroides_fragilis']['nanopore']['test_fastq_gz'], checkIfExists: true) ]
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]
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UNICYCLER ( input )
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}
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