mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
62 lines
2.2 KiB
YAML
62 lines
2.2 KiB
YAML
- name: Run samtools flagstat test workflow
|
|
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_flagstat -c tests/config/nextflow.config
|
|
tags:
|
|
- samtools
|
|
- samtools_flagstat
|
|
files:
|
|
- path: output/samtools/test.paired_end.sorted.bam.flagstat
|
|
md5sum: 80590621c74f5ee43ada20d010a3837f
|
|
|
|
- name: Run samtools idxstats test workflow
|
|
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_idxstats -c tests/config/nextflow.config
|
|
tags:
|
|
- samtools
|
|
- samtools_idxstats
|
|
files:
|
|
- path: output/samtools/test.paired_end.sorted.bam.idxstats
|
|
md5sum: 3bee8b7d55e412da2b3816c5a18d60d5
|
|
|
|
- name: Run samtools index test workflow
|
|
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_index -c tests/config/nextflow.config
|
|
tags:
|
|
- samtools
|
|
- samtools_index
|
|
files:
|
|
- path: output/samtools/test.paired_end.sorted.bam.bai
|
|
md5sum: 67338c2995eae82c849830ca55aa7bd1
|
|
|
|
- name: Run samtools sort test workflow
|
|
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_sort -c tests/config/nextflow.config
|
|
tags:
|
|
- samtools
|
|
- samtools_sort
|
|
files:
|
|
- path: output/samtools/test.bam
|
|
md5sum: a41bfadacd2eeef1d31e05c135cc4f4e
|
|
|
|
- name: Run samtools stats test workflow
|
|
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_stats -c tests/config/nextflow.config
|
|
tags:
|
|
- samtools
|
|
- samtools_stats
|
|
files:
|
|
- path: output/samtools/test.paired_end.sorted.bam.stats
|
|
md5sum: 06c183864d6e47ab89b0650cae831a93
|
|
|
|
- name: Run samtools view test workflow
|
|
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_view -c tests/config/nextflow.config
|
|
tags:
|
|
- samtools
|
|
- samtools_view
|
|
files:
|
|
- path: output/samtools/test.bam
|
|
md5sum: 7ea2c325e2249ed7ef44e1d9fdc4f8ff
|
|
|
|
- name: Run samtools mpileup test workflow
|
|
command: nextflow run ./tests/software/samtools/ -profile docker -entry test_samtools_mpileup -c tests/config/nextflow.config
|
|
tags:
|
|
- samtools
|
|
- samtools_mpileup
|
|
files:
|
|
- path: output/samtools/test.mpileup
|
|
md5sum: 95c2646fa7bd535207722008c581c81d
|