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https://github.com/MillironX/nf-core_modules.git
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f32dc15414
* update bclconvert module, as used in nf-core/demultiplex * reconfigure test with new test data * update test * formatting * update outputs, update meta * update module and test * update test config, test.yml * fix linting * emit logs and reports as dir * fix typo, recreate test.yml * fix linting Co-authored-by: CMGG ICT Team <ict@cmgg.be>
23 lines
761 B
Text
23 lines
761 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BCLCONVERT } from '../../../modules/bclconvert/main.nf'
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include { UNTAR } from '../../../modules/untar/main.nf'
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workflow test_bclconvert {
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ch_flowcell = Channel.value([
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[id:'test', lane:1 ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_flowcell_samplesheet'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['test_flowcell'], checkIfExists: true)])
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ch_flowcell
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.multiMap { meta, ss, run ->
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samplesheet: [meta, ss]
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tar: [meta, run]
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}.set{ ch_fc_split }
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ch_flowcell_untar = ch_fc_split.samplesheet.join( UNTAR ( ch_fc_split.tar ).untar )
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BCLCONVERT (ch_flowcell_untar)
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}
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