mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 19:48:16 +00:00
17 lines
585 B
Text
17 lines
585 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { HMMER_HMMALIGN } from '../../../../modules/hmmer/hmmalign/main.nf'
|
|
|
|
workflow test_hmmer_hmmalign {
|
|
|
|
input = [
|
|
[ id:'test' ], // meta map
|
|
file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/e_coli_k12_16s.fna') // Change to params.test_data syntax after the data is included in tests/config/test_data.config
|
|
]
|
|
|
|
hmm = file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/bac.16S_rRNA.hmm')
|
|
|
|
HMMER_HMMALIGN ( input, hmm )
|
|
}
|