mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
c3bacb9fdd
* Add deeparg download data * Tweak downloaddata test.yml * Add deeparg tests * Apply suggestions from code review * Fix output file paths in test * Fix tests again md5sum to string
30 lines
745 B
Text
30 lines
745 B
Text
def VERSION='1.0.2'
|
|
|
|
process DEEPARG_DOWNLOADDATA {
|
|
label 'process_low'
|
|
|
|
conda (params.enable_conda ? "bioconda::deeparg=1.0.2" : null)
|
|
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
|
|
'https://depot.galaxyproject.org/singularity/deeparg:1.0.2--pyhdfd78af_1' :
|
|
'quay.io/biocontainers/deeparg:1.0.2--pyhdfd78af_1' }"
|
|
|
|
input:
|
|
|
|
output:
|
|
path "db/" , emit: db
|
|
path "versions.yml" , emit: versions
|
|
|
|
script:
|
|
def args = task.ext.args ?: ''
|
|
"""
|
|
deeparg \\
|
|
download_data \\
|
|
$args \\
|
|
-o db/
|
|
|
|
cat <<-END_VERSIONS > versions.yml
|
|
"${task.process}":
|
|
deeparg: $VERSION
|
|
END_VERSIONS
|
|
"""
|
|
}
|