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c3bacb9fdd
* Add deeparg download data * Tweak downloaddata test.yml * Add deeparg tests * Apply suggestions from code review * Fix output file paths in test * Fix tests again md5sum to string
33 lines
1,017 B
YAML
33 lines
1,017 B
YAML
name: deeparg_downloaddata
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description: A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes
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keywords:
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- download
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- database
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- deeparg
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- antimicrobial resistance genes
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- deep learning
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- prediction
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tools:
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- deeparg:
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description: A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes
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homepage: https://bench.cs.vt.edu/deeparg
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documentation: https://bitbucket.org/gusphdproj/deeparg-ss/src/master/
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tool_dev_url: https://bitbucket.org/gusphdproj/deeparg-ss/src/master/
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doi: "10.1186/s40168-018-0401-z"
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licence: ['MIT']
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input:
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- none: There is no input. This module downloads a pre-built database for use with deepARG.
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- db:
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type: directory
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description: Directory containing database required for deepARG.
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pattern: "db/"
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authors:
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- "@jfy133"
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