mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
33 lines
1.1 KiB
Text
Executable file
33 lines
1.1 KiB
Text
Executable file
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { NEXTCLADE } from '../../../modules/nextclade/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_nextclade_json {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
NEXTCLADE ( input, 'json' )
|
|
}
|
|
|
|
workflow test_nextclade_csv {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
NEXTCLADE ( input, 'csv' )
|
|
}
|
|
|
|
workflow test_nextclade_tsv {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
NEXTCLADE ( input, 'tsv' )
|
|
}
|
|
|
|
workflow test_nextclade_tree {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
]
|
|
NEXTCLADE ( input, 'tree' )
|
|
}
|