mirror of
https://github.com/MillironX/nf-core_modules.git
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a25423dbb9
* add gatk4/combinegvcfs module * update gatk4/combinegvcfs * loop to create a string adding -V to each vcf file * add contains for variable md5 * rm whitespace * meta in output * fix indentations * fix indentations * move tmpdir to args and update conda version Co-authored-by: Peri <rrx8@cdc.gov> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
10 lines
386 B
YAML
10 lines
386 B
YAML
- name: gatk4 combinegvcfs test_gatk4_combinegvcfs
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command: nextflow run tests/modules/gatk4/combinegvcfs -entry test_gatk4_combinegvcfs -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/combinegvcfs
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files:
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- path: output/gatk4/test.combined.g.vcf.gz
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contains: ['VCFv4.2']
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- path: output/gatk4/versions.yml
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md5sum: 49d9c467f84b6a99a4da3ef161af26bd
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