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https://github.com/MillironX/nf-core_modules.git
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938387d10d
* feat: add hmmsearch module and tests * chore: set medium resource requirements * tests: look for correct output * fix: add when condition * Apply suggestions to meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * refactor: create gzip compressed output * docs: describe compressed in-/output Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
31 lines
980 B
YAML
31 lines
980 B
YAML
- name: hmmer hmmsearch test_hmmer_hmmsearch
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command: nextflow run tests/modules/hmmer/hmmsearch -entry test_hmmer_hmmsearch -c tests/config/nextflow.config
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tags:
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- hmmer/hmmsearch
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- hmmer
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files:
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- path: output/hmmer/test.txt.gz
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contains:
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- '[ok]'
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- path: output/hmmer/versions.yml
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md5sum: ed0808c10abd205c6bd0fb01f45259bb
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- name: hmmer hmmsearch test_hmmer_hmmsearch_optional
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command: nextflow run tests/modules/hmmer/hmmsearch -entry test_hmmer_hmmsearch_optional -c tests/config/nextflow.config
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tags:
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- hmmer/hmmsearch
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- hmmer
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files:
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- path: output/hmmer/test.sto.gz
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md5sum: d3121aa33455074c566fb7f8fdcda7b0
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- path: output/hmmer/test.domtbl.gz
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contains:
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- '# [ok]'
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- path: output/hmmer/test.tbl.gz
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contains:
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- '# [ok]'
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- path: output/hmmer/test.txt.gz
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contains:
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- '[ok]'
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- path: output/hmmer/versions.yml
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md5sum: ebdcb08ae540e840f7b5c4c75a3a2993
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