mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 13:23:09 +00:00
938387d10d
* feat: add hmmsearch module and tests * chore: set medium resource requirements * tests: look for correct output * fix: add when condition * Apply suggestions to meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * refactor: create gzip compressed output * docs: describe compressed in-/output Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
31 lines
980 B
YAML
31 lines
980 B
YAML
- name: hmmer hmmsearch test_hmmer_hmmsearch
|
|
command: nextflow run tests/modules/hmmer/hmmsearch -entry test_hmmer_hmmsearch -c tests/config/nextflow.config
|
|
tags:
|
|
- hmmer/hmmsearch
|
|
- hmmer
|
|
files:
|
|
- path: output/hmmer/test.txt.gz
|
|
contains:
|
|
- '[ok]'
|
|
- path: output/hmmer/versions.yml
|
|
md5sum: ed0808c10abd205c6bd0fb01f45259bb
|
|
|
|
- name: hmmer hmmsearch test_hmmer_hmmsearch_optional
|
|
command: nextflow run tests/modules/hmmer/hmmsearch -entry test_hmmer_hmmsearch_optional -c tests/config/nextflow.config
|
|
tags:
|
|
- hmmer/hmmsearch
|
|
- hmmer
|
|
files:
|
|
- path: output/hmmer/test.sto.gz
|
|
md5sum: d3121aa33455074c566fb7f8fdcda7b0
|
|
- path: output/hmmer/test.domtbl.gz
|
|
contains:
|
|
- '# [ok]'
|
|
- path: output/hmmer/test.tbl.gz
|
|
contains:
|
|
- '# [ok]'
|
|
- path: output/hmmer/test.txt.gz
|
|
contains:
|
|
- '[ok]'
|
|
- path: output/hmmer/versions.yml
|
|
md5sum: ebdcb08ae540e840f7b5c4c75a3a2993
|