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64 lines
2 KiB
YAML
64 lines
2 KiB
YAML
name: bandage_image
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description: Render an assembly graph in GFA 1.0 format to PNG and SVG image formats
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keywords:
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- gfa
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- graph
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- assembly
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- visualisation
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tools:
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- bandage:
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description: |
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Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
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homepage: https://github.com/rrwick/Bandage
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documentation: https://github.com/rrwick/Bandage
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params:
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- outdir:
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type: string
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description: |
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The pipeline's output directory. By default, the module will
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output files into `$params.outdir/<SOFTWARE>`
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- publish_dir_mode:
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type: string
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description: |
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Value for the Nextflow `publishDir` mode parameter.
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Available: symlink, rellink, link, copy, copyNoFollow, move.
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- enable_conda:
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type: boolean
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description: |
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Run the module with Conda using the software specified
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- gfa:
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type: file
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description: Assembly graph in GFA 1.0 format
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pattern: "*.gfa"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- png:
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type: file
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description: Bandage image in PNG format
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pattern: "*.png"
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- svg:
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type: file
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description: Bandage image in SVG format
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pattern: "*.svg"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@heuermh"
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