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4d89d6b2f0
* hifiasm copied from fastqc * hifiasm tests init from fastqc * meta.yml init; test.yml and main.nf for printing version * Add hifiasm version printing * Removed spaced on an empty line * Reverted hifiasm from main * Updated seacr callpeak to include a control threshold * Whitespace Co-authored-by: Sviatoslav Sidorov <sviatoslav.sidorov@crick.ac.uk> Co-authored-by: Svyatoslav Sidorov <svet.sidorov@gmail.com>
23 lines
No EOL
777 B
Text
23 lines
No EOL
777 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SEACR_CALLPEAK } from '../../../../modules/seacr/callpeak/main.nf' addParams( options: [ args:'norm stringent' ] )
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workflow test_seacr_callpeak {
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input = [ [ id:'test_1'],
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file(params.test_data['homo_sapiens']['illumina']['cutandrun_bedgraph_test_1'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['illumina']['cutandrun_bedgraph_test_2'], checkIfExists: true)
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]
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SEACR_CALLPEAK ( input, 0.05 )
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}
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workflow test_seacr_callpeak_threshold {
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input = [ [ id:'test_1'],
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file(params.test_data['homo_sapiens']['illumina']['cutandrun_bedgraph_test_1'], checkIfExists: true),
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[]
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]
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SEACR_CALLPEAK ( input, 0.05 )
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} |