mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
c485109d9b
* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Add bamAlignCleaner module * Add container tags * Update modules/bamaligncleaner/main.nf
40 lines
1 KiB
YAML
40 lines
1 KiB
YAML
name: bamaligncleaner
|
|
description: removes unused references from header of sorted BAM/CRAM files.
|
|
keywords:
|
|
- bam
|
|
tools:
|
|
- bamaligncleaner:
|
|
description: Removes unaligned references in aligned BAM alignment file
|
|
homepage: https://github.com/maxibor/bamAlignCleaner
|
|
documentation: https://github.com/maxibor/bamAlignCleaner
|
|
tool_dev_url: https://github.com/maxibor/bamAlignCleaner
|
|
licence: ['GPL v3']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: BAM/CRAM file
|
|
pattern: "*.{bam,cram}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- bam:
|
|
type: file
|
|
description: Sorted BAM/CRAM file
|
|
pattern: "*.{bam,cram}"
|
|
|
|
authors:
|
|
- "@jfy133"
|