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e687c7025a
* add plink2_extract * fix test yml path * Update modules/plink2/extract/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/plink2/extract/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * compress output * add DOI * make outputs less ambiguous * update test for compressed output * brain is dumb * Update modules/plink2/extract/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
12 lines
305 B
Text
12 lines
305 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: PLINK2_VCF {
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ext.args = '--make-pgen --set-missing-var-ids @:#:\\$1:\\$2'
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}
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withName: PLINK2_EXTRACT {
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ext.prefix = { "${meta.id}.extract" }
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}
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}
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