mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-20 23:32:05 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
45 lines
1.3 KiB
YAML
45 lines
1.3 KiB
YAML
name: cutadapt
|
|
description: Perform adapter/quality trimming on sequencing reads
|
|
keywords:
|
|
- trimming
|
|
- adapter trimming
|
|
- adapters
|
|
- quality trimming
|
|
tools:
|
|
- cuatadapt:
|
|
description: |
|
|
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
|
|
documentation: https://cutadapt.readthedocs.io/en/stable/index.html
|
|
doi: DOI:10.14806/ej.17.1.200
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: |
|
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
|
|
respectively.
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- reads:
|
|
type: file
|
|
description: The trimmed/modified fastq reads
|
|
pattern: "*fastq.gz"
|
|
- log:
|
|
type: file
|
|
description: cuatadapt log file
|
|
pattern: "*cutadapt.log"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|