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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
29 lines
766 B
YAML
29 lines
766 B
YAML
name: minimap2_index
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description: Provides fasta index required by minimap2 alignment.
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keywords:
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- index
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- fasta
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- reference
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tools:
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- minimap2:
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description: |
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A versatile pairwise aligner for genomic and spliced nucleotide sequences.
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homepage: https://github.com/lh3/minimap2
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documentation: https://github.com/lh3/minimap2#uguide
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input:
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- fasta:
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type: file
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description: |
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Reference database in FASTA format.
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output:
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- mmi:
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type: file
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description: Minimap2 fasta index.
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pattern: "*.mmi"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@yuukiiwa"
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- "@drpatelh"
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