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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
21 lines
850 B
YAML
21 lines
850 B
YAML
- name: trimgalore single-end
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command: nextflow run ./tests/modules/trimgalore/ -entry test_trimgalore_single_end -c tests/config/nextflow.config
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tags:
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- trimgalore
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files:
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# These can't be md5'd reliably
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# TODO Test for includes
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- path: ./output/trimgalore/test.fastq.gz_trimming_report.txt
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- path: ./output/trimgalore/test_trimmed.fq.gz
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- name: trimgalore paired-end
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command: nextflow run ./tests/modules/trimgalore/ -entry test_trimgalore_paired_end -c tests/config/nextflow.config
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tags:
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- trimgalore
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files:
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# These can't be md5'd reliably
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# TODO Test for includes
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- path: ./output/trimgalore/test_2_val_2.fq.gz
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- path: ./output/trimgalore/test_1_val_1.fq.gz
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- path: ./output/trimgalore/test_1.fastq.gz_trimming_report.txt
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- path: ./output/trimgalore/test_2.fastq.gz_trimming_report.txt
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