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55 lines
1.6 KiB
YAML
55 lines
1.6 KiB
YAML
name: prodigal
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description: Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
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keywords:
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- sort
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tools:
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- prodigal:
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description: Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
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homepage: https://github.com/hyattpd/Prodigal
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documentation: https://github.com/hyattpd/prodigal/wiki
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tool_dev_url: https://github.com/hyattpd/Prodigal
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doi: "10.1186/1471-2105-11-119"
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licence: ["GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- genome:
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type: file
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description: fasta/fasta.gz file
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- output_format:
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type: string
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description: Output format ("gbk"/"gff"/"sqn"/"sco")
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- nucleotide_fasta:
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type: file
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description: nucleotide sequences file
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pattern: "*.{fna}"
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- amino_acid_fasta:
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type: file
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description: protein translations file
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pattern: "*.{faa}"
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- all_gene_annotations:
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type: file
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description: complete starts file
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pattern: "*.{_all.txt}"
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- gene_annotations:
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type: file
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description: gene annotations in output_format given as input
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pattern: "*.{output_format}"
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authors:
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- "@grst"
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