nf-core_modules/modules/dragmap/align/meta.yml
Edmund Miller f3ffa69b8d
Dragmap (#1108)
* feat(dragmap): Add initial hastable module

* feat(dragmap): Add initial align module

* test(dragmap): Remove md5sum

Forgot sam files have a header. Might pipe this through samtools.

* build(dragmap): Add mulled container

* chore(dragmap): Update prefix

* feat(dragmap): Output a bam file

* feat(dragmap): Add log files

* Update modules/dragmap/align/meta.yml

Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
2021-12-06 09:56:41 +01:00

42 lines
1.2 KiB
YAML

name: dragmap_align
description: Performs fastq alignment to a reference using DRAGMAP
keywords:
- alignment
- map
- fastq
- bam
- sam
tools:
- dragmap:
description: Dragmap is the Dragen mapper/aligner Open Source Software.
homepage: https://github.com/Illumina/dragmap
documentation: https://github.com/Illumina/dragmap
tool_dev_url: https://github.com/Illumina/dragmap#basic-command-line-usage
doi: ""
licence: ['GPL v3']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.
- hashmap:
type: file
description: DRAGMAP hash table
pattern: "Directory containing DRAGMAP hash table *.{cmp,.bin,.txt}"
output:
- bam:
type: file
description: Output BAM file containing read alignments
pattern: "*.{bam}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@Emiller88"