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nf-core_modules/modules/gatk4
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FriederikeHanssen a9dd46f010
add gatk4/gatherbqsr (#1130) 
* nf-core modules create

* add module files

* indent

* remove templte code

* manually revert pytest changes from tools

* manually revert pytest changes from tools

* add include statement back in

Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
2021-12-08 23:43:36 +01:00
..
applybqsr Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
baserecalibrator Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
bedtointervallist Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
calculatecontamination Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
createsequencedictionary Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
createsomaticpanelofnormals Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
estimatelibrarycomplexity Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
fastqtosam Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
filtermutectcalls Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
gatherbqsrreports add gatk4/gatherbqsr (#1130) 2021-12-08 23:43:36 +01:00
genomicsdbimport Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
genotypegvcfs Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
getpileupsummaries Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
haplotypecaller Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
indexfeaturefile Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
intervallisttools Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
learnreadorientationmodel Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
markduplicates Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
mergebamalignment Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
mergevcfs Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
mutect2 Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
revertsam Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
samtofastq Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
splitncigarreads Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00
variantfiltration Add memory stuff to all gatk4 modules (#1122) 2021-12-07 15:22:24 +01:00