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* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Add bamUtil trimBam * Update modules/bamutil/trimbam/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/bamutil/trimbam/main.nf * Changes after code-review * YAML lint * update: add (optional) meta to input tuple * YAML linting * Update main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
34 lines
943 B
YAML
34 lines
943 B
YAML
name: gunzip
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description: Compresses and decompresses files.
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keywords:
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- gunzip
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- compression
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tools:
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- gunzip:
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description: |
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gzip is a file format and a software application used for file compression and decompression.
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documentation: https://www.gnu.org/software/gzip/manual/gzip.html
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licence: ['GPL-3.0-or-later']
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input:
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- meta:
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type: map
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description: |
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Optional groovy Map containing meta information
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e.g. [ id:'test', single_end:false ]
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- archive:
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type: file
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description: File to be compressed/uncompressed
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pattern: "*.*"
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output:
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- gunzip:
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type: file
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description: Compressed/uncompressed file
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pattern: "*.*"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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- "@jfy133"
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