nf-core_modules/modules/rseqc/readduplication/meta.yml
Kevin 3aacd46da2
Backfill software licenses meta (#876)
* backfilled modules with meta.yml that had no license identifier

* harmonized BSD license names

* whitespace linting at modules/unzip/meta.yml:12

* harmonized software from US NIH-NCBI/NIST to 'US-Government-Work'

* Update modules/bcftools/index/meta.yml

`bcftools` is dual-licensed, use associative array to allow for multiple licenses

Co-authored-by: Michael L Heuer <heuermh@acm.org>

Co-authored-by: Michael L Heuer <heuermh@acm.org>
2021-10-22 15:39:54 -07:00

52 lines
1.4 KiB
YAML

name: rseqc_readduplication
description: Calculate read duplication rate
keywords:
- rnaseq
- duplication
tools:
- rseqc:
description: |
RSeQC package provides a number of useful modules that can comprehensively evaluate
high throughput sequence data especially RNA-seq data.
homepage: http://rseqc.sourceforge.net/
documentation: http://rseqc.sourceforge.net/
doi: 10.1093/bioinformatics/bts356
licence: ['GPL-3.0-or-later']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: the alignment in bam format
pattern: "*.{bam}"
- bed:
type: file
description: a bed file for the reference gene model
pattern: "*.{bed}"
output:
- seq_xls:
type: file
description: Read duplication rate determined from mapping position of read
pattern: "*seq.DupRate.xls"
- pos_xls:
type: file
description: Read duplication rate determined from sequence of read
pattern: "*pos.DupRate.xls"
- pdf:
type: file
description: plot of duplication rate
pattern: "*.pdf"
- rscript:
type: file
description: script to reproduce the plot
pattern: "*.R"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@drpatelh"
- "@kevinmenden"