mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
6806cd1de9
* feat(bbmap): Initialize pileup module * test(bbmap): Update outputs * test(bbmap): Add pileup tags * style(bbmap): Add in when Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
15 lines
360 B
Text
15 lines
360 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { BBMAP_PILEUP } from '../../../../modules/bbmap/pileup/main.nf'
|
|
|
|
workflow test_bbmap_pileup {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
|
|
]
|
|
|
|
BBMAP_PILEUP ( input )
|
|
}
|