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https://github.com/MillironX/nf-core_modules.git
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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
15 lines
630 B
YAML
15 lines
630 B
YAML
- name: pbccs test_pbccs
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command: nextflow run ./tests/modules/pbccs -entry test_pbccs -c ./tests/config/nextflow.config -c ./tests/modules/pbccs/nextflow.config
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tags:
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- pbccs
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files:
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- path: output/pbccs/alz.chunk2.bam
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md5sum: 2b6451f2d0454eb08359cb84e2e4069c
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- path: output/pbccs/alz.chunk2.bam.pbi
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md5sum: 3112cda9744e3facbf38245d41aaf080
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- path: output/pbccs/alz.chunk2.metrics.json.gz
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contains: ["zmws"]
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- path: output/pbccs/alz.chunk2.report.json
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contains: ["Created by pbcopper"]
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- path: output/pbccs/alz.chunk2.report.txt
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md5sum: bbc5bd7a1269345cf7a7f3d4c746024b
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