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48 lines
1.3 KiB
YAML
48 lines
1.3 KiB
YAML
name: rasusa
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description: Randomly subsample sequencing reads to a specified coverage
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keywords:
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- coverage
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- depth
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- subsampling
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tools:
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- rasusa:
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description: Randomly subsample sequencing reads to a specified coverage
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homepage: https://github.com/mbhall88/rasusa
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documentation: https://github.com/mbhall88/rasusa/blob/master/README.md
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tool_dev_url: https://github.com/mbhall88/rasusa
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doi: "10.5281/zenodo.3731394"
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- reads:
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type: file
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description: List of input paired-end FastQ files
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- genome_size:
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type: string
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description: Genome size of the species
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- depth_cutoff:
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type: integer
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description: Depth of coverage cutoff
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- reads:
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type: file
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description: Reads with subsampled coverage
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pattern: "*.fastq.gz"
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authors:
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- "@thanhleviet"
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