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nf-core_modules/tests/software/gatk4
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Harshil Patel 5e18e36895
Update and check tests are running for all modules (#420) 
* Fixes for PR 371

* Fix tags

* Add md5sum

* Add md5sums for stringtie

* Fix tests for modules where subtool = build

* Fix pytest_software name conflicts

* Change _ to / in test.yml tags

* Nope...that didnt work

* Fix sequenzautils/bam2seqz tests
2021-04-09 13:47:05 +01:00
..
applybqsr Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
baserecalibrator Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
bedtointervallist Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
createsequencedictionary Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
fastqtosam Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
haplotypecaller Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
markduplicates Update and check tests are running for all modules (#420) 2021-04-09 13:47:05 +01:00
mergebamalignment Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
mergevcfs Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
revertsam Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
samtofastq Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
splitncigarreads Lint modules ci (#389) 2021-04-08 09:10:52 +01:00
variantfiltration Lint modules ci (#389) 2021-04-08 09:10:52 +01:00