mirror of
https://github.com/MillironX/nf-core_modules.git
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9bda3dc7f0
* create pear module * add command and tests * remove md5sum from known empty file * add force -f to gzip and gunzip to avoid problems with symbolic links * apply suggestions from review
50 lines
1.4 KiB
YAML
50 lines
1.4 KiB
YAML
name: "pear"
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description: PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger.
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keywords:
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- pair-end
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- read
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tools:
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- "pear":
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description: "paired-end read merger"
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homepage: "{https://cme.h-its.org/exelixis/web/software/pear/}"
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documentation: "{https://cme.h-its.org/exelixis/web/software/pear/doc.html}"
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tool_dev_url: "{}"
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doi: ""
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licence: "['Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- reads:
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type: file
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description: |
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List of input FastQ files with paired-end reads forward and reverse.
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- assembled:
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type: file
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description: FastQ file containing Assembled reads.
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pattern: "*.{fastq.gz}"
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- unassembled:
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type: file
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description: FastQ files containing Unassembled forward and reverse reads.
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pattern: "*.{fastq.gz}"
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- discarded:
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type: file
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description: FastQ file containing discarded reads.
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pattern: "*.{fastq.gz}"
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authors:
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- "@mirpedrol"
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