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https://github.com/MillironX/nf-core_modules.git
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c736d26b7e
* Added missing "ucsc" tags (as per the convention) * Added support for the -as input file * Added a test
25 lines
999 B
Text
25 lines
999 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { UCSC_BEDTOBIGBED } from '../../../../modules/ucsc/bedtobigbed/main.nf'
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include { UCSC_BEDTOBIGBED as UCSC_BEDTOBIGBED_AS } from '../../../../modules/ucsc/bedtobigbed/main.nf'
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workflow test_ucsc_bedtobigbed {
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input = [ [ id: 'test' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true ) ]
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]
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sizes = file(params.test_data['sarscov2']['genome']['genome_sizes'], checkIfExists: true)
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UCSC_BEDTOBIGBED ( input, sizes, [] )
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}
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workflow test_ucsc_bedtobigbed_autosql {
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input = [ [ id: 'test' ], // meta map
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[ file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true ) ]
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]
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sizes = file(params.test_data['sarscov2']['genome']['genome_sizes'], checkIfExists: true)
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autosql = file(params.test_data['sarscov2']['genome']['bed_autosql'], checkIfExists: true)
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UCSC_BEDTOBIGBED_AS ( input, sizes, autosql )
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}
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