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nf-core_modules/tests/software/gatk4
praveenraj2018 598ca152ec
Intervallisttools ()
* added intervallisttools module

* add intervallisttools module

* arguments are now supplied using options.args

* removed java heapsize settings

* changes in main.nf and it is tested

* comment added

* Update software/gatk4/intervallisttools/meta.yml

Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>

* Update tests/software/gatk4/intervallisttools/test.yml

Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>

* review comment on tags in bedtointerval

* modified the test to get input from bedtointerval module

* Update software/gatk4/intervallisttools/meta.yml

* Apply suggestions from code review

Co-authored-by: Kevin Menden <kevin.menden@live.com>

* Apply suggestions from code review

* Update tests/config/pytest_software.yml

Co-authored-by: Kevin Menden <kevin.menden@live.com>

* Apply suggestions from code review

* Apply suggestions from code review

Co-authored-by: @praveenraj2018 <praveen.raj.somarajan@ki.se>
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
Co-authored-by: Kevin Menden <kevin.menden@live.com>
2021-05-12 11:44:36 +02:00
..
applybqsr remove deprecated test tags () 2021-04-13 18:03:09 +01:00
baserecalibrator remove deprecated test tags () 2021-04-13 18:03:09 +01:00
bedtointervallist Lint modules ci () 2021-04-08 09:10:52 +01:00
createsequencedictionary Update and check tests are running for all modules () 2021-04-09 13:47:05 +01:00
fastqtosam remove deprecated test tags () 2021-04-13 18:03:09 +01:00
haplotypecaller Update and check tests are running for all modules () 2021-04-09 13:47:05 +01:00
intervallisttools Intervallisttools () 2021-05-12 11:44:36 +02:00
markduplicates Update and check tests are running for all modules () 2021-04-09 13:47:05 +01:00
mergebamalignment Lint modules ci () 2021-04-08 09:10:52 +01:00
mergevcfs remove deprecated test tags () 2021-04-13 18:03:09 +01:00
revertsam Lint modules ci () 2021-04-08 09:10:52 +01:00
samtofastq remove deprecated test tags () 2021-04-13 18:03:09 +01:00
splitncigarreads Lint modules ci () 2021-04-08 09:10:52 +01:00
variantfiltration Lint modules ci () 2021-04-08 09:10:52 +01:00