| .. |
|
applybqsr
|
Update md5sums
|
2022-05-12 16:07:12 +02:00 |
|
applybqsrspark
|
Update md5sums
|
2022-05-12 16:07:12 +02:00 |
|
applyvqsr
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
baserecalibrator
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
baserecalibratorspark
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
bedtointervallist
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
calculatecontamination
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
combinegvcfs
|
double tmpdir args removed, porb leftover after massive refactor where we decided to make it mandatory everywhere
|
2022-05-12 16:16:53 +02:00 |
|
createsequencedictionary
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
createsomaticpanelofnormals
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
estimatelibrarycomplexity
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
fastqtosam
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
filtermutectcalls
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
gatherbqsrreports
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
gatherpileupsummaries
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
genomicsdbimport
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
genotypegvcfs
|
fix test input
|
2022-05-12 17:37:06 +02:00 |
|
getpileupsummaries
|
getpileupsummaries requires intervals files
|
2022-05-12 16:51:17 +02:00 |
|
haplotypecaller
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
indexfeaturefile
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
intervallisttobed
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
intervallisttools
|
Update md5sums
|
2022-05-12 16:07:12 +02:00 |
|
learnreadorientationmodel
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
markduplicates
|
Update md5sums
|
2022-05-12 16:07:12 +02:00 |
|
markduplicatesspark
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
mergebamalignment
|
fix datatest for stubs
|
2022-05-06 15:34:18 +02:00 |
|
mergemutectstats
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
mergevcfs
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
mutect2
|
fix datatest for stubs
|
2022-05-06 15:34:18 +02:00 |
|
revertsam
|
fix datatest for stubs
|
2022-05-06 15:34:18 +02:00 |
|
samtofastq
|
fix datatest for stubs
|
2022-05-06 15:34:18 +02:00 |
|
selectvariants
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
splitintervals
|
removed versions checksum
|
2022-05-13 14:27:59 +02:00 |
|
splitncigarreads
|
Update md5sums
|
2022-05-12 16:07:12 +02:00 |
|
variantfiltration
|
Improve syntax/logic coherence in all gatk4 plugins (#1459)
|
2022-04-12 17:15:39 +02:00 |
|
variantrecalibrator
|
Update md5sums
|
2022-05-12 16:07:12 +02:00 |
