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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
21 lines
1,023 B
YAML
21 lines
1,023 B
YAML
- name: tbprofiler profile illumina
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command: nextflow run ./tests/modules/tbprofiler/profile -entry test_tbprofiler_profile_illumina -c ./tests/config/nextflow.config -c ./tests/modules/tbprofiler/profile/nextflow.config
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tags:
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- tbprofiler
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- tbprofiler/profile
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files:
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- path: output/tbprofiler/bam/test.bam
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- path: output/tbprofiler/results/test.results.json
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contains: ["genome_positions", "locus_tag", "tbprofiler_version"]
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- path: output/tbprofiler/vcf/test.targets.csq.vcf.gz
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- name: tbprofiler profile nanopore
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command: nextflow run ./tests/modules/tbprofiler/profile -entry test_tbprofiler_profile_nanopore -c ./tests/config/nextflow.config -c ./tests/modules/tbprofiler/profile/nextflow.config
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tags:
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- tbprofiler
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- tbprofiler/profile
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files:
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- path: output/tbprofiler/bam/test.bam
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- path: output/tbprofiler/results/test.results.json
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contains: ["genome_positions", "locus_tag", "tbprofiler_version"]
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- path: output/tbprofiler/vcf/test.targets.csq.vcf.gz
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