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params {
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force_large_index = false
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}
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process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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}
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if (params.force_large_index) {
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process {
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withName: BOWTIE2_BUILD {
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ext.args = '--large-index'
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}
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}
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}
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